Association | OTU | Cases at admission versus controls | Cases at recovery versus controls | ||
FC | Significant within | FC | Significant within | ||
Admission | Lactococcus lactis (67) | 2.06 | ms+V | ns | ns |
Corynebacteriaceae (161) | 1.83 | ms+V | ns | ns | |
Abiotrophia (111) | 1.66 | ms+V | ns | ns | |
Corynebacterium (62) | 1.64 | ms | ns | ns | |
Megasphaera (137) | 1.62 | ms | ns | ns | |
Fusobacterium (74) | 1.61 | ms | ns | ns | |
Actinomyces (48) | 1.56 | ms | ns | ns | |
Fusobacterium (83) | 1.53 | ms | ns | ns | |
Actinomyces graevenitzii (68) | 1.52 | ms+V | ns | ns | |
Acinetobacter soli (125) | 1.51 | ms | ns | ns | |
Actinomyces johnsonii (75) | 1.51 | ms | ns | ns | |
Dolosigranulum pigrum (5) | 0.43 | ms | ns | ns | |
Dolosigranulum (122) | 0.4 | ms+V | ns | ns | |
Admission and recovery | Haemophilus influenzae/haemolyticus (2) | 3.85 | ms+V | 1.69 | V |
Neisseria lactamica (19) | 2.22 | ms+V | 1.96 | ms+V | |
Prevotella oris (45) | 2.03 | ms | 1.72 | ms+V | |
Moraxella (54) | 0.32 | ms+V | 0.45 | ms+V | |
Moraxella (58) | 0.19 | ms+V | 0.45 | ms+V | |
Moraxella lincolnii (6) | 0.18 | ms+V | 0.3 | ms+V | |
Moraxella (84) | 0.17 | ms+V | 0.34 | ms | |
Moraxella (163) | 0.15 | ms+V | 0.39 | ms+V | |
Moraxella (112) | 0.08 | ms | 1.68 | ms | |
Helcococcus (43) | 0.07 | ms | 0.07 | ms+V | |
Recovery | Neisseriaceae (15) | ns | ns | 2.26 | ms+V |
Moraxella (12) | ns | ns | 1.83 | ms | |
Porphyromonas (39) | ns | ns | 1.62 | ms | |
Bradyrhizobium (17) | ns | ns | 1.54 | ms+V | |
Janthinobacterium lividum (23) | ns | ns | 0.09 | ms+V |
FC: fold change; ms: metagenomeSeq analysis; V: VSURF analysis; ns: not significantly different.