EV-TRACK: transparent reporting and centralizing knowledge in extracellular vesicle research

…, P Agostinis, Ö Akay, S Anand, J Anckaert… - Nature …, 2017 - nature.com
We argue that the field of extracellular vesicle (EV) biology needs more transparent reporting
to facilitate interpretation and replication of experiments. To achieve this, we describe EV-…

LNCipedia 5: towards a reference set of human long non-coding RNAs

PJ Volders, J Anckaert, K Verheggen… - Nucleic acids …, 2019 - academic.oup.com
While long non-coding RNA (lncRNA) research in the past has primarily focused on the
discovery of novel genes, today it has shifted towards functional annotation of this large class of …

The RNA Atlas expands the catalog of human non-coding RNAs

…, J Nuytens, K Vanderheyden, J Anckaert… - Nature …, 2021 - nature.com
Existing compendia of non-coding RNA (ncRNA) are incomplete, in part because they are
derived almost exclusively from small and polyadenylated RNAs. Here we present a more …

[HTML][HTML] MISpheroID: a knowledgebase and transparency tool for minimum information in spheroid identity

A Peirsman, E Blondeel, T Ahmed, J Anckaert… - Nature …, 2021 - nature.com
Spheroids are three-dimensional cellular models with widespread basic and translational
application across academia and industry. However, methodological transparency and …

miRBase Tracker: keeping track of microRNA annotation changes

G Van Peer, S Lefever, J Anckaert, A Beckers… - Database, 2014 - academic.oup.com
Since 2002, information on individual microRNAs (miRNAs), such as reference names and
sequences, has been stored in miRBase, the reference database for miRNA annotation. As a …

[PDF][PDF] Charting extracellular transcriptomes in the human biofluid RNA atlas

…, K Verniers, J Nuytens, EV Eynde, N Yigit, J Anckaert… - Cell reports, 2020 - cell.com
Extracellular RNAs present in biofluids have emerged as potential biomarkers for disease.
Where most studies focus on blood-derived fluids, other biofluids may be more informative. …

[HTML][HTML] Comparative analysis of naive, primed and ground state pluripotency in mouse embryonic stem cells originating from the same genetic background

…, M Van der Jeught, J Neupane, MS Roost, J Anckaert… - Scientific reports, 2018 - nature.com
Mouse embryonic stem cells (mESCs) exist in a naive, primed and ground state of
pluripotency. While comparative analyses of these pluripotency states have been reported, the …

[HTML][HTML] Performance assessment of total RNA sequencing of human biofluids and extracellular vesicles

…, R Van Paemel, K Verniers, J Nuytens, J Anckaert… - Scientific reports, 2019 - nature.com
RNA profiling has emerged as a powerful tool to investigate the biomarker potential of
human biofluids. However, despite enormous interest in extracellular nucleic acids, RNA …

SMARTer single cell total RNA sequencing

…, KJ Livak, N Yigit, D Rombaut, J Anckaert… - Nucleic acids …, 2019 - academic.oup.com
Single cell RNA sequencing methods have been increasingly used to understand cellular
heterogeneity. Nevertheless, most of these methods suffer from one or more limitations, such …

Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision

M Vromman, J Anckaert, S Bortoluzzi, A Buratin… - Nature …, 2023 - nature.com
The detection of circular RNA molecules (circRNAs) is typically based on short-read RNA
sequencing data processed using computational tools. Numerous such tools have been …